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  • fbreitwieser pavian: Interactive analysis of metagenomics . . . - GitHub
    Pavian is a interactive browser application for analyzing and visualization metagenomics classification results from classifiers such as Kraken, KrakenUniq, Kraken 2, Centrifuge and MetaPhlAn Pavian also provides an alignment viewer for validation of matches to a particular genome
  • Pavian - Johns Hopkins University
    Pavian is a web application for exploring metagenomics classification results, with a special focus on infectious disease diagnosis Pinpointing pathogens in metagenomics classification results is often complicated by host and laboratory contaminants as well as many non-pathogenic microbiota
  • Pavian - Hiplot
    Pavian is a tool for interactive analysis of metagenomics classification results Read more about it in the Preprint or its vignette It's built on R and Shiny , and supports Kraken , Centrifuge and MetaPhlAn report files
  • Pavian: interactive analysis of metagenomics data for microbiome . . .
    Pavian is a web application for exploring classification results from metagenomics experiments With Pavian, researchers can analyze, visualize and transform results from various classifiers—such as Kraken, Centrifuge and MethaPhlAn—using interactive data tables, heatmaps and Sankey flow diagrams
  • fbreitwieser pavian: Visualize and analyze metagenomics classification . . .
    fbreitwieser pavian: Visualize and analyze metagenomics classification results R package and Shiny app to visualize and analyze metagenomics classification results from Kraken, Centrifuge and MetaPhlAn
  • Pavian: Interactive analysis of metagenomics data for . . . - bioRxiv
    With Pavian, researchers can analyze, display and transform results from the Kraken and Centrifuge classifiers using interactive tables, heatmaps and flow diagrams Pavian also provides an alignment viewer for validation of matches to a particular genome
  • pavian package - RDocumentation
    Pavian is a interactive browser application for analyzing and visualization metagenomics classification results from classifiers such as Kraken, Centrifuge and MetaPhlAn Pavian also provides an alignment viewer for validation of matches to a particular genome
  • Metagenomic Classification Tutorial - EPI2ME Labs
    Viewing results with pavian¶ The pavian application can be used to visualise the results of a metagenomics classifer, including amonst other things producing Sankey diagrams In order to use pavian we must first convert the centrifuge report into a different format, this is done with the centrifuge-kreport program:
  • pavian vignettes MANUAL. md at master · fbreitwieser pavian
    🌈 Interactive analysis of metagenomics data Contribute to fbreitwieser pavian development by creating an account on GitHub
  • Pavian: Interactive analysis of metagenomics data for microbiome . . .
    Pavian is a web application for exploring classification results from metagenomics experiments With Pavian, researchers can analyze, visualize and transform results from various classifiers-such as Kraken, Centrifuge and MethaPhlAn-using interactive data tables, heatmaps and Sankey flow diagrams





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