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  • Introducing QuPath: Open source bioimage analysis digital pathology
    Hi everyone, I wanted to announce here that I recently put online a new open source software application for bioimage analysis, called QuPath
  • QuPath v0. 2. 0 now available! - Announcements - Image. sc Forum
    More than three years since the last stable version, I’m happy tired nervous relieved to announce with @melvingelbard that QuPath v0 2 0 is now available via https: qupath github io This is the first stable Edinburgh release of QuPath If you haven’t been keeping up with the milestone (pre-)releases along the way, you will find that a lot has changed since v0 1 2 Highlights include
  • Qupath extension Segment Anything Model (SAM) - Image. sc Forum
    Overview I released a QuPath extension for SAM This is a part of the following preprint Sugawara, K Training deep learning models for cell image segmentation with sparse annotations bioRxiv 2023 doi:10 1101 2023 …
  • Trouble getting GPU to work with InstanSeg + QuPath
    Thanks! I’m having some trouble with DJL 0 30 0 + PyTorch 2 4 0 With CUDA 12 4 it is unable to initialize: Caused by: java lang UnsatisfiedLinkError: D:\\Software\\ djl ai\\pytorch\\2 4 0-cu124-win-x86_64\\torch_cuda dll: Can't find dependent libraries With CUDA 12 1 it does initialize but sticks to CPU, not giving the GPU option for InstanSeg
  • Qupath Extensions Warpy and ABBA released for QuPath 0. 5. x
    Dear all, The Warpy extension compatible with version 0 5 0 of QuPath is out, as well as the ABBA extension Additionally, bash installer scripts have been updated to install QuPath 0 5 and its extensions Feel free to leave any feedback or issues here Cheers, Nico, @phaub, @oburri
  • ᴗ•) QuPath scripting (#4): Image Combiner . . . - Image. sc Forum
    Triggered by the post I have modified @petebankhaeds QuPath feature ‘Interactive image alignment’ and packed it as QuPath extension ‘ImageCombiner’ The ImageCombiner can be used to align images and create new project entries with the combined and aligned image channels Download qupath-extension-imagecombiner-0 2 3 jar zip (33 2 KB) Extract the jar file and save in the QuPath
  • Embedding Fiji inside QuPath - Development - Image. sc Forum
    To obtain an updated qupath-app jar, you can download one I already built: qupath-app-0 6 0-SNAPSHOT jar (15 4 KB) (Note: it is built on qupath qupath@6be855e8, which is already not quite the latest version on the main branch ) Or build it yourself Clone the QuPath repository Apply the above patch
  • QuPath MacOS User Install - Usage Issues - Image. sc Forum
    I am on an Apple Silicon (ARM) Mac, where I don’t have root with which to install QuPath The regular pkg installer fails without root The official QuPath releases for Mac are pkg files, meaning that they can’t be just dragged to a user Applications directory like a app It is possible for pkg installers to support user installation (e g the one for Quarto does), but the QuPath one





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